Ogun  Adebali

Türkçe sürüm

Ogun Adebali

E-mail : oadebalisabanciuniv.edu

Personal web page

Areas of Interest :

Computational Genomics, Protein Informatics, Molecular Evolution, DNA Damage and Repair

Awards :

  • BAGEP, Young Scientist Award - Sabanci University  2019

Membership :

The Ecology and Evolutionary Biology Society of Turkey Molecular Biology Association

Publications :

Gumerov, Vadim M. and Ortega, Davi R. and Adebali, Ogün and Ulrich, Luke E. and Zhulin, Igor B. (2020) "MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems", Nucleic Acid Research, Vol.48, No.D1, D459-D464 (SCI)
Li, Wentao and Liu, Wenjie and Kakoki, Ayano and Wang, Rujin and Adebali, Ogün and Jiang, Yuchao and Sancar, Aziz (2019) "Nucleotide excision repair capacity increases during differentiation of human embryonic carcinoma cells into neurons and muscle cells", Journal of Biological Chemistry, Vol.294, No.15, 5914-5922 (SCI)
Askar, Yimit and Adebali, Ogün and Sancar, Aziz and Jiang, Yuchao (2019) "Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs", Nature Communicaitons, Vol.10 (SCI)
Hu, Jinchuan and Li, Wentao and Adebali, Ogün and Yang, Yanyan and Öztaş, Onur and Selby, Christopher P. and Sancar, Aziz (2019) "Genome-wide mapping of nucleotide excision repair with XR-seq", Nature Protocols, Vol.14, No.1, 248-282 (SCI)
Before SU Publications:
  1. Yang Y., Adebali O., Wu G., Selby C.P., Rashid N., Hogenesch J.B., Sancar A.* (2018) Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues. PNAS, 21(115), E4777-E4785.
  2. Oztas O., Selby C.P., Sancar A.*, Adebali O.* (2018) Genome-wide Excision Repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns.  Nature Communications, 9(1), 1503.
  3. Li W., Adebali O., Yang Y., Selby C.P., Sancar A.* (2018) Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome.  PNAS, 115(15), E3408-E3415.
  4. Adebali O., Sancar A.*, Selby C.P.* (2017) Mfd translocase is necessary and sufficient for transcription-coupled repair in Escherichia coli. The Journal of Biological Chemistry, 292(45), 18386-18391.
  5. Hu J., Selby C.P., Adar S., Adebali O., Sancar A.* (2017) Molecular mechanism of DNA excision repair and excision repair maps of the human and E. coli genomes.The Journal of Biological Chemistry, 292(38), 15588-15597.
  6. Hu J.#, Adebali O.#, Adar S., Sancar A.* (2017) Dynamic maps of UV damage formation and repair. PNAS, 114(26), 6758-6763.
  7. Li W., Hu J., Adebali O., Adar S., Yang Y., Chiou Y., Sancar A.* (2017) Human genome-wide repair map of DNA damage caused by the cigarette smoke carcinogen benzo[a]pyrene. PNAS, 114(26), 6752-6757.
  8. Adebali O., Petukh M., Reznik A., Tishkov A., Upadhyay A., Zhulin I.B.* (2017) Class III histidine kinases: a recently accessorized kinase domain in putative modulators of type IV pili based motility. Journal of Bacteriology, 199(18), e00218-17.
  9. Adebali O., Chiou Y., Hu J., Sancar A.*, Selby C.P.* (2017) Genome-wide transcription-coupled repair in Escherichia coli is mediated by the Mfd translocase. PNAS, 114(11), E2116-E2125.
  10. Adebali O.*, Zhulin I.B. (2016)  Aquerium: a web application for comparative exploration of domain-based protein occurrences on the taxonomically clustered genome tree.  Proteins, 85(1), 72-77.
  11. Upadhyay A.A., Fleetwood A.D., Adebali O., Finn R., Zhulin I.B.* (2016) Cache domains are dominant extracellular sensors for signal transduction in prokaryotes. PLOS Computational Biology, 12(4).
  12. Adebali O., Reznik A.O., Ory D.S., Zhulin, I.B.* (2016) Establishing the precise evolutionary history of a gene improves predicting disease-causing missense mutations. Genetics in Medicine, 18(10), 1029-1036.
  13. Adebali O.*, Ortega D.R., Zhulin I.B.* (2015) CDvist: a webserver for identification and visualization of conserved domains in protein sequences. Bioinformatics, 31(9), 1475–1477.

# Equal Contribution | * Corresponding Author